Dissection for the structure and function of a 5'-proximal prominent stem-loop in Porcine Repro

来源 :2013国际猪繁殖与呼吸综合征学术研讨会 | 被引量 : 0次 | 上传用户:lingang89029
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Introduction Like other arteriviruses,PRRSV 5 UTR is believed to carry a variety of cis-acting elements that regulate the discrete steps of viral life cycle.But the regulatory function and mechanism need to be addressed.PRRSV has been characterized into two distinct genotypes,type 1 and type 2.After alignment,the 5 UTRs of two genotypes are different in length and just share about 60% nucleotide identity.Nevertheless,the secondary structures of 5 UTR in two genotypes are quite similar and characterized by six major putative stem-loops,especially the prominent one which transcription-regulatory sequence (TRS) located in.Our previous research showed that the prominent stem-loop structure in SL5 is very important for viral infectivity and RNA synthesis,but the detailed regulatory function of each part of the structure is lack of experimental research.According to RNA structure model,we arbitrarily divide the prominent stem-loop structure in SL5 into three portions A/A loop part,B/B stem part,C (common) top stem-loop.In this study,we focused on the stem part B/B in order to dissect its regulatory function in viral life cycle.
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