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In Southwest China, five Nature Reserves(NRs)(Mangkang, Baimaxueshan, Yunling, Habaxueshan, and Yunlongtianchi) play a key role in protecting the endemic and endangered Yunnan snub-nosed monkey(YSM)(Rhinopithecus bieti). However, increasing human activities threaten its habitats and corridors. We used a GIS-based Niche Model to delineate potential core habitats(PCHs) of the YSMs and a Linkage Mapper corridor simulation tool to restore potential connectivity corridors(PCCs), and defined five scenarios. A normalized importance value index(NIVI) was established to identify the protection priority areas(PPAs) for the YSMs for five scenarios. The results indicated that locations of the habitats and corridors were different in the five scenarios, thereby influencing the distribution of the PPAs and protection network of the YSMs. The NIVI value of Baimaxueshan nature reserve was 1 in the five scenarios, which implied the maximum importance. There were only 7 PCHs and 16 PCCs(with the longest average length of 223.13 km) which were mainly located around 5 NRs in scenario III. The protection network of the YSMs was composed of 16 PCHs, 18 PCCs, and 5 NRs. Under each scenario, most of the PCHs and the PCCs were located in the south of the study area. The five NRs only covered 2 PPAs of the YSMs. We suggest that the southern part of the study area needs to be strictly protected and human activities should be limited. The area of the five NRs should be expanded to maximize protection of the YSMs in the future.