【摘 要】
：
SAROTUP (Scanner And Reporter Of Target-Unrelated Peptides) 3.0 is a significant upgrade to the widely used SAROTUP web server for the rapid identification of target-unrelated peptides (TUPs) from bio
【机 构】
：
电子科技大学生命科学与技术学院,神经信息教育部重点实验室,成都610054; 电子科技大学生命科学
【出 处】
：
第七届全国生物信息学与系统生物学学术大会
论文部分内容阅读
SAROTUP (Scanner And Reporter Of Target-Unrelated Peptides) 3.0 is a significant upgrade to the widely used SAROTUP web server for the rapid identification of target-unrelated peptides (TUPs) from biopanning data.At present,SAROTUP 3.0 has gathered a suite of tools for finding potential TUPs and other purposes.Besides TUPScan,the motif-based tool,three tools based on the BDB database,i.e.,MimoScan,MimoSearch,and MimoBlast and two predictors based on machine learning methods,i.e.,PhD7Faster and SABinder,are integrated into the latest version of SAROTUP.TUPScan empowers the identification of peptides with known TUP motifs.In the current version,27 TUP motifs and 823 TUP sequences are implanted in TUPScan.MimoScan is designed to find peptides with query patterns in the BDB database.It can be used to fred other peptides in the BDB database with known TUP motifs;it can also check how specific the patterns derived from biopanning results are.MimoSearch can be applied to find peptides identical to query sequences in the BDB database.
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