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We report the simulation of photonic crystals by holographic lithography.In optical path,prisms and polarizers for multi-beams control are well integrated,forming a stable and reliable system.In this article,the desirable parameters of the authors optical system will be discussed.This paper analyzed the simulation studies of fabricating three-dimensional photonic crystals by holographic lithography.This paper studies the influence of phase and polarization to the result of experiment.Theory guidance is provided to control intensity and polarization of holographic interference experiments,which paves a way for the optimized fabrication of structures.