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Based on the analysis of developing target, function and constitution of research projects system for remote management, the virtual account system is established on 3 layers of B/S mode. The development process of virtual account system is realized by JSP/Servlets development language and MySQL database under windows server 2003 platform. At the same time, network security module of the system has been realized to reduce the influence caused by network security incidents. The system is capable of updating the information of vertical and horizontal projects dynamically and assigning virtual funds on WWW. Also, it realizes the query, statistical analysis function and so on.Practical results show that the system is a successful system for analyzing the various projects index of different departments.