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根据已报道的马铃薯卷叶病毒基因组序列,设计合成一对特异性引物。以马铃薯卷叶病毒中国分离株(PLRV-Ch)的RNA为模板,反转录合成了cDNA第一条链,经PCR扩增后克隆于pUC19质粒中。进一步用PCR鉴定,限制酶切分析和序列分析。结果表明,PLRV-Ch56kD蛋白基因由1527个核苷酸组成,编码508个氨基酸,3'端非编码区由141个核苷酸组成,与国外报道的苏格兰PLRV-S、荷兰PLRV-N、加拿大PLRV-C、澳大利亚PLRV-A各株系核苷酸序列和氨基酸序列有很高的同源性。56kD蛋白基因核苷酸同源率分别为97.1%、97.8%、97.1%和93.9%,推测的氨基酸同源率分别为96.2%、96.4%、95.8%和94.6%,非编码区核苷酸同源率分别为97.9%、97.2%、98.6%和98.6%。
According to the published sequence of potato leafroll virus genome, a pair of specific primers were designed and synthesized. The first strand of cDNA was reverse transcribed using the RNA of Potato Leafroll Virus Chinese isolate (PLRV-Ch) as a template and cloned into pUC19 plasmid by PCR amplification. Further identification by PCR, restriction analysis and sequence analysis. The results showed that the PLRV-Ch56kD protein gene consisted of 1527 nucleotides and encoded 508 amino acids, while the 3’-terminal non-coding region consisted of 141 nucleotides. Compared with the reported PLRV-S in Scotland, PLRV-N in the Netherlands, PLRV-C, Australia PLRV-A strains of nucleotide and amino acid sequences have very high homology. The nucleotide homology of 56kD protein gene was 97.1%, 97.8%, 97.1% and 93.9%, respectively. The deduced amino acid homologies were 96.2%, 96.4%, 95% .8% and 94.6% respectively. The nucleotide homology of non-coding region was 97.9%, 97.2%, 98.6% and 98.6% respectively.