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Objective: Study on the system of quality control of Mongolian medicine holographic qualitative similarity of the Pterocarpus indicus Willd.of traditional Mongolian medicine IR fingerprint.Methods:With the purchase of three different times to different locations of Pterocarpus indicus Willd.of traditional Mongolian medicine IR fingerprint experimental results as an example, from the chemical composition distribution similarity in different batches of sandalwood incense cornmereial medicinal materials and the control fingerprint evaluation.Results:Three different time and different place to buy medicine of Pterocarpus indicus Willd.powder with infrared characteristic fingerprint of unique and stable, and with the control fingerprint similarity, The qualitative similarity is 0.99%.Conclusion:The method is simple, easy to operate, can be used as a qualitative identification method of the Pterocarpus indicus Willd.medicine, and made the research on new drugs of fingerprints and quantitative standards,development of compound preparation provides a reliable basis for Mongolian medicine of sandalwood incense.