Pathogen detection in Prostate Cancer using NGS data

来源 :第六届全国生物信息学与系统生物学学术大会暨国际生物信息学前沿研讨会 | 被引量 : 0次 | 上传用户:anruixiang
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
  Background: Prostate Cancer (PCa) is one of the most common cancers in men.Many microbes were reported to be potential cause of PCa in the past 60 years, like human papillomavirus (HPV), human cytomegalovirus (HCMV), herpes simplex virus (HSV), Epstein-Barr virus (EBV), BK virus (BKV), and xenotropic murine leukemia virus-related virus (XMRV).However, conflicting and controversial results were also reported and to date no microbe is accepted as an etiologic agent to PCa.Next Generation Sequencing (NGS) is more sensitive in detecting sequences in samples and RNA-seq can detect active microbes.We therefore attempted to analyze viral and bacterial sequences from RNA-seq data of PCa and benign prostate tissues, to inspect the potential association between PCa and microbes.
其他文献
  Aging is a complex and universal phenomenon.In the last few decades, application of molecular genetics to the study of aging in model organisms has revealed
会议
  With the advent of high-throughput technologies making large-scale gene expression data readily available, developing appropriate computational tools to pro
会议
活性氧物质(ROS)是细胞胞内氧代谢的副产物,其水平受到外界环境调节,并可作为细胞内信号转导的第二信使,参与调控细胞的氧化应激、增殖、分化、衰老及凋亡等生理活动.
  Genome-wide CRISPR-Cas9 knockout screen (GeCKO) is a promising technique for discovering phenotype-associated gene function.The sensitivity of the screen de
会议
  Background: Genome-wide association studies have revealed that rare variants are responsible for a large portion of the heritability of some complex human d
  In eukaryotic chromatin, as epigenetic information is encoded and decoded through the combination function of multiple chromatin regulators, revealing the f
  It remains an open question when and how the first cell fate decision is made in mammals.Using deep single-cell RNA-seq of matched sister blastomeres, we re
会议
  Understanding how metabolic reactions translate the genome of an organism into its phenotype is a grand challenge in biology, which ties genomics to phenomi
  The availability of multi-types of omic data collected on cancer tissues across different cancer types provided unprecedented opportunities for computationa
会议
  长期以来,生物信息学这一快速发展的学科一直致力于利用多种组学数据并提出多种算法,力图解析疾病发生机制并进而助力于提升新药研发速度和质量。然而,历经四十余年的发展之
会议