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The endophytic fungus Phomopsis liquidambari play a key role in habitat adaptation of rice(Oryza sativa L.)with potential multiple beneficial.However,our previous published work on this subject remains incomplete.Here,we performed a soil nutrient(nitrogen and phosphorus)transformation with related functional genes and elucidated how rhizosphere microbiota vary their response to P.liquidambari interaction throughout the plants life cycle under field conditions by Illumina Miseq sequencing platforms in a nutrient-limited paddy soil.